Dear Ben,
SAM assumes that the photovoltaic array is sized to operate within the inverter voltage limits. That is why it displays messages about potential sizing problems on the Array page, and why it displays messages about operating outside the limits in the post-simulation messages.
The simulation model is not detailed enough to model the actual behavior of an inverter operating outside of its limits, but it does check the limits and give you feedback when the limits are exceeded.
See the description in
SAM Help -- Sizing the Flat Plate PV System
topic under "Post Simulation Warning Messages" for more details.
Best regards,
Paul.