Hi Naga,
How SAM's photovoltaic model calculates the short circuit current depends on the option you choose on the Module page. If you choose the Sandia module model, then the calculations will use the empirically-derived equations you show below. Otherwise, if you choose the "CEC" module model, the calculations are based on a different single-diode model.
These models are described in the Photovoltaic Technical Reference Update, which you can download from the SAM website at
sam.nrel.gov/photovoltaic/pv-publications.html
.
Best regards,
Paul.