Hi Denise,
As of SAM 2020.2.29, the Physical Trough model no longer models fossil backup because the new dispatch optimization algorithm we added in that version does not support it.
In SAM 2018.11.11 and earlier, the backup level is determined by the fossil fill fraction and dispatch schedule in the table on the Thermal Storage page. Please see that input page's Help topic for a description.
Best regards,
Paul.