Hi Ivan,
The difference in annual output between the two cases has something to do with the interconnection limit. You can see that on the Losses page, and also by showing the "Annual energy loss from interconnection limit (year 1) (kWh) value. If you disable the interconnection limit, the two cases have the same annual energy value.
I'm not sure exactly why that is different between the two cases, but suspect it has to do with the way SAM is dispatching the lead acid and Li-ion LPF battery. The two battery types have different charge and discharge characteristics.
If you look at the battery state of charge (SOC) on the Time Series tab, you can see for the lead acid battery that between May and June, the SOC range suddenly drops from up to 90% to less 20%. I will investigate further and let you know what I find.
Best regards,
Paul.